Dr Bing Liu
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Publications related to this Person
Journal articles
Ooi CY; Carter DR; Liu B; Mayoh C; Beckers A; Lalwani A; Nagy Z; De Brouwer S; Decaesteker B; Hung TT, 2018, 'Network modeling of microRNA-mRNA interactions in neuroblastoma tumorigenesis identifies miR-204 as a direct inhibitor of MYCN', Cancer Research, vol. 78, pp. 3122 - 3134, http://dx.doi.org/10.1158/0008-5472.CAN-17-3034
Sun Y; Atmadibrata B; Yu D; Wong M; Liu B; Ho N; Ling D; Tee AE; Wang J; Mungrue IN, 2017, 'Upregulation of LYAR induces neuroblastoma cell proliferation and survival', Cell Death and Differentiation, vol. 24, pp. 1645 - 1654, http://dx.doi.org/10.1038/cdd.2017.98
Xue C; Yu DMT; Gherardi S; Koach J; Milazzo G; Gamble L; Liu B; Valli E; Russell AJ; London WB, 2016, 'MYCN promotes neuroblastoma malignancy by establishing a regulatory circuit with transcription factor AP4', Oncotarget, vol. 7, pp. 54937 - 54951, http://dx.doi.org/10.18632/oncotarget.10709
Somers K; Chudakova DA; Middlemiss SMC; Wen VW; Clifton M; Kwek A; Liu B; Mayoh C; Bongers A; Karsa M, 2016, 'CCI-007, a novel small molecule with cytotoxic activity against infant leukemia with MLL rearrangements', Oncotarget, vol. 7, pp. 46067 - 46087, http://dx.doi.org/10.18632/oncotarget.10022
O'Brien R; Tran SL; Maritz MF; Liu B; Kong CF; Purgato S; Yang C; Murray J; Russell AJ; Flemming CL, 2016, 'MYC-driven neuroblastomas are addicted to a telomerase-independent function of dyskerin', Cancer Research, vol. 76, pp. 3604 - 3617, http://dx.doi.org/10.1158/0008-5472.CAN-15-0879
Tee AE; Liu B; Song R; Li J; Pasquier E; Cheung BB; Jiang C; Marshall GM; Haber M; Norris MD, 2016, 'The long noncoding RNA MALAT1 promotes tumor-driven angiogenesis by up-regulating pro-angiogenic gene expression', Oncotarget, vol. 7, pp. 8663 - 8675, http://dx.doi.org/10.18632/oncotarget.6675
Kim PY; Tan O; Liu B; Trahair T; Liu T; Haber M; Norris MD; Marshall GM; Cheung BB, 2016, 'High TDP43 expression is required for TRIM16-induced inhibition of cancer cell growth and correlated with good prognosis of neuroblastoma and breast cancer patients', Cancer Letters, vol. 374, pp. 315 - 323, http://dx.doi.org/10.1016/j.canlet.2016.02.021
Liu PY; Erriquez D; Marshall GM; Tee AE; Polly P; Wong M; Liu B; Bell JL; Zhang XD; Milazzo G, 2015, 'Erratum: Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression (Journal of the National Cancer Institute (2014) 106:7 (dju113) DOI: 10.1093/jnci/dju113)', Journal of the National Cancer Institute, vol. 107, http://dx.doi.org/10.1093/jnci/dju359
Sun Y; Bell JL; Carter D; Gherardi S; Poulos RC; Milazzo G; Wong JWH; Al-Awar R; Tee AE; Liu PY, 2015, 'WDR5 supports an N-myc transcriptional complex that drives a protumorigenic gene expression signature in neuroblastoma', Cancer Research, vol. 75, pp. 5143 - 5154, http://dx.doi.org/10.1158/0008-5472.CAN-15-0423
Carter DR; Murray J; Cheung BB; Gamble L; Koach J; Tsang J; Sutton S; Kalla H; Syed S; Gifford AJ, 2015, 'Therapeutic targeting of the MYC signal by inhibition of histone chaperone FACT in neuroblastoma', Science Translational Medicine, vol. 7, http://dx.doi.org/10.1126/scitranslmed.aab1803
Zhang J; Le TD; Liu L; Liu B; He J; Goodall GJ; Li J, 2014, 'Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data', Bioinformatics, vol. 30, pp. 3070 - 3077, http://dx.doi.org/10.1093/bioinformatics/btu489
Zhang J; Le TD; Liu L; Liu B; He J; Goodall GJ; Li J, 2014, 'Identifying direct miRNA-mRNA causal regulatory relationships in heterogeneous data', Journal of Biomedical Informatics, vol. 52, pp. 438 - 447, http://dx.doi.org/10.1016/j.jbi.2014.08.005
Le TD; Liu L; Zhang J; Liu B; Li J, 2014, 'From miRNA regulation to miRNA-TF co-regulation: Computational approaches and challenges', Briefings in Bioinformatics, vol. 16, pp. 475 - 496, http://dx.doi.org/10.1093/bib/bbu023
Cheung BB; Tan O; Koach J; Liu B; Shum MSY; Carter DR; Sutton S; Po'uha ST; Chesler L; Haber M, 2014, 'Thymosin-β4 is a determinant of drug sensitivity for Fenretinide and Vorinostat combination therapy in neuroblastoma', Molecular Oncology, http://dx.doi.org/10.1016/j.molonc.2015.04.005
Carroll AP; Goodall GJ; Liu B, 2014, 'Understanding principles of miRNA target recognition and function through integrated biological and bioinformatics approaches', Wiley Interdisciplinary Reviews: RNA, vol. 5, pp. 361 - 379, http://dx.doi.org/10.1002/wrna.1217
Dietrich PA; Yang C; Leung HHL; Lynch JR; Gonzales E; Liu B; Haber M; Norris MD; Wang J; Wang JY, 2014, 'GPR84 sustains aberrant β-catenin signaling in leukemic stem cells for maintenance of MLL leukemogenesis', Blood, vol. 124, pp. 3284 - 3294, http://dx.doi.org/10.1182/blood-2013-10-532523
Liu PY; Erriquez D; Marshall GM; Tee AE; Polly P; Wong M; Liu B; Bell JL; Zhang XD; Milazzo G, 2014, 'Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression', Journal of the National Cancer Institute, vol. 106, http://dx.doi.org/10.1093/jnci/dju113
Shahbazi J; Scarlett CJ; Norris MD; Liu B; Haber M; Tee AE; Carrier A; Biankin AV; London WB; Marshall GM, 2014, 'Histone Deacetylase 2 and N-Myc reduce p53 protein phosphorylation at serine 46 by repressing gene transcription of tumor protein 53-induced nuclear protein 1', Oncotarget, vol. 5, pp. 4257 - 4268, http://dx.doi.org/10.18632/oncotarget.1991
Tee AE; Ling D; Nelson C; Atmadibrata B; Dinger ME; Xu N; Mizukami T; Liu PY; Liu B; Cheung B, 2014, 'The histone demethylase JMJD1A induces cell migration and invasion by up-regulating the expression of the long noncoding RNA MALAT1', Oncotarget, vol. 5, pp. 1793 - 1804, http://dx.doi.org/10.18632/oncotarget.1785
Liu B; Li J; Cairns MJ, 2014, 'Identifying miRNAs, targets and functions', Briefings in Bioinformatics, vol. 15, pp. 1 - 19, http://dx.doi.org/10.1093/bib/bbs075
Gupta P; Liu B; Wu JQ; Soriano V; Vispo E; Carroll AP; Goldie BJ; Cairns MJ; Saksena NK, 2014, 'Genome-wide mRNA and miRNA analysis of peripheral blood mononuclear cells (PBMC) reveals different miRNAs regulating HIV/HCV co-infection', Virology, vol. 450-451, pp. 336 - 349, http://dx.doi.org/10.1016/j.virol.2013.12.026
Liu B; Liu L; Tsykin A; Goodall GJ; Cairns MJ; Li J, 2013, 'Discovering functional microRNAmRNA regulatory modules in heterogeneous data', Advances in Experimental Medicine and Biology, vol. 774, pp. 267 - 290, http://dx.doi.org/10.1007/978-94-7-5590-1_14
Liu B; Liu L; Tsykin A; Goodall GJ; Cairns MJ; Li J, 2013, 'Discovering functional microRNAmRNA regulatory modules in heterogeneous data', Advances in Experimental Medicine and Biology, vol. 774, pp. 267 - 290, http://dx.doi.org/10.1007/978-94-007-5590-1-14
Le TD; Liu L; Tsykin A; Goodall GJ; Liu B; Sun BY; Li J, 2013, 'Inferring microRNA-mRNA causal regulatory relationships from expression data', Bioinformatics, vol. 29, pp. 765 - 771, http://dx.doi.org/10.1093/bioinformatics/btt048
Le TD; Liu L; Liu B; Tsykin A; Goodall GJ; Satou K; Li J, 2013, 'Inferring microRNA and transcription factor regulatory networks in heterogeneous data', BMC Bioinformatics, vol. 14, http://dx.doi.org/10.1186/1471-2105-14-92
Gardiner EJ; Cairns MJ; Liu B; Beveridge NJ; Carr V; Kelly B; Scott RJ; Tooney PA, 2013, 'Gene expression analysis reveals schizophrenia-associated dysregulation of immune pathways in peripheral blood mononuclear cells', Journal of Psychiatric Research, vol. 47, pp. 425 - 437, http://dx.doi.org/10.1016/j.jpsychires.2012.11.007
Santarelli DM; Liu B; Duncan CE; Beveridge NJ; Tooney PA; Schofield PR; Cairns MJ, 2013, 'Gene-microRNA interactions associated with antipsychotic mechanisms and the metabolic side effects of olanzapine', Psychopharmacology, vol. 227, pp. 67 - 78, http://dx.doi.org/10.1007/s00213-012-2939-y
Liu B; Liu L; Tsykin A; Goodall GJ; Cairns MJ; Li J, 2013, 'Discovering functional microRNA-mRNA regulatory modules in heterogeneous data.', Advances in experimental medicine and biology, vol. 774, pp. 267 - 290, http://dx.doi.org/10.1007/978-94-007-5590-1_14
Sun Y; Liu PY; Malyukova A; MacKenzie KL; Scarlett CJ; Liu B; Marshall GM; Liu T; Biankin AV, 2013, 'Histone deacetylase 5 blocks neuroblastoma cell differentiation by interacting with N-Myc', Oncogene, http://dx.doi.org/10.1038/onc.2013.253
Zhou L; Pupo GM; Gupta P; Liu B; Tran SL; Rahme R; Wang B; Rua R; Rizos H; Carroll A, 2012, 'A parallel genome-wide mRNA and microRNA profiling of the frontal cortex of HIV patients with and without HIV-associated dementia shows the role of axon guidance and downstream pathways in HIV-mediate', BMC Genomics, vol. 13, http://dx.doi.org/10.1186/1471-2164-13-677
Zhang J; Liu B; He J; Ma L; Li J, 2012, 'Inferring functional miRNA-mRNA regulatory modules in epithelial-mesenchymal transition with a probabilistic topic model', Computers in Biology and Medicine, vol. 42, pp. 428 - 437, http://dx.doi.org/10.1016/j.compbiomed.2011.12.011
Liu B; Liu L; Tsykin A; Goodall GJ; Green JE; Zhu M; Kim CH; Li J, 2010, 'Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation', Bioinformatics, vol. 26, pp. 3105 - 3111, http://dx.doi.org/10.1093/bioinformatics/btq576
Liu B; Li J; Tsykin A; Liu L; Gaur AB; Goodall GJ, 2009, 'Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy', BMC Bioinformatics, vol. 10, http://dx.doi.org/10.1186/1471-2105-10-408
Liu B; Li J; Tsykin A, 2009, 'Discovery of functional miRNA-mRNA regulatory modules with computational methods', Journal of Biomedical Informatics, vol. 42, pp. 685 - 691, http://dx.doi.org/10.1016/j.jbi.2009.01.005
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